|
KMID : 0613820110210060788
|
|
Journal of Life Science
2011 Volume.21 No. 6 p.788 ~ p.795
|
|
|
Change of Sequences and Identification of Chyseobacterium indologenes in Korea by 16S rRNA
|
|
Huh Man-Kyu
Park So-Hye
Yum Jong-Hwa
|
|
|
Abstract
|
|
|
|
Accurate identification for pathogenic bacterium is an essential element in the clinical microbiology laboratory. We studied molecular analysis involving the identification of Chyseobacterium indologenes and evaluated the seventeen isolates in Korea with the 16S rRNA gene of the ribosome to estimate phylogenetic relationships within the genus Chyseobacterium in GenBank. The aligned data sets for C. indologenes were 1,176 nucleotides. Sequence variation within the C. indologenes was mostly due to nucleotide substitutions. Korean C. indologenes isolates were not strikingly different from the same species found in the other countries. However, the rates of base substitution in Korean C. indologenes isolates were higher than those of other C. indologenes isolates in GenBank. C. indologenes was placed as a sister species to C. isbiliense, C. hominis, C. hispanicum, C. molle, C. hungaricum, and C. pallidum.
|
|
|
KEYWORD
|
|
|
Chyseobacterium indologenes, 16S rRNA, phylogenetic relationship
|
|
|
FullTexts / Linksout information
|
|
|
|
|
|
Listed journal information
|
|
|